About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80880604_80899882_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80880604 - 80899882
Intron Length:
19279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGTACACTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
TATTTGTACACT
Flanking Amino Acid:
NVESATHEEVVHLLRNAGDE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
64.5
0.33
1.1
58.3
42.1
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
44.8
-0.3
2.6
72.02
45.1

Associated Gene:

Gene:
SNTG2
Ensembl Gene ID:
ENSAPLG00000015579
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016246
80771342 - 80932375
161034