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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80900087_80911635_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80900087 - 80911635
Intron Length:
11549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTGAATTAAAT
Flanking Amino Acid:
VISKMFKDQAADQTGMLFIG
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
76
0.59
0.9
69.4
36.6
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
54.8
0.23
2
79.82
41.4

Associated Gene:

Gene:
SNTG2
Ensembl Gene ID:
ENSAPLG00000015579
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016246
80771342 - 80932375
161034