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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8091604_8096146_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8091604 - 8096146
Intron Length:
4543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
CTTTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CCTGCTTTATTT
Flanking Amino Acid:
EEPLGSLAADGFCSQASSLK
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68
42.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
89.2
0.88
0.7
84.2
30.3
Minor 5ss
42.5
-0.8
2.8
51.6
44.8
Minor BPS
52.4
0.15
1.7
66.47
45.5

Associated Gene:

Gene:
KIZ
Ensembl Gene ID:
ENSAPLG00000013782
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034654
8067605 - 8115336
47732
ENSAPLT00000028496
8074785 - 8115336
40552
ENSAPLT00000014367
8067559 - 8115336
47778