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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8096203_8096289_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8096203 - 8096289
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTGTGCA
5'SS Class:
major
3'SS Sequence:
ATTCTCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCCAC
U12 Branch Point Sequence:
AGGCACCCACCC
Flanking Amino Acid:
VSEDSSSEPLPSSPRAAEEE
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
65.5
33.5
Major BPS
46.9
-0.1
1.1
53.7
32.6
Major PPT
79.2
0.66
0.8
73.8
30.4
Minor 5ss
33.8
-1.9
3
37.8
42.2
Minor BPS
36.1
-1
1.9
41.58
37.7

Associated Gene:

Gene:
KIZ
Ensembl Gene ID:
ENSAPLG00000013782
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034654
8067605 - 8115336
47732