Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_80974032_80977993_F

Intron Information:

Intron Rank:

148028

Intron Class:

major

Intron Phase:

Intron Coordinates:

80974032 - 80977993

Intron Length:

3962

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

TGTACATGTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTATTCTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

77.8

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

64.9

0.33

41.9

Minor 5ss

30.7

-2.2

3.3

39.5

45.9

Minor BPS

53.6

-0

1.7

64.05

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029694

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025143

80974000 - 80979017

5018