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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_809949_822916_F

Intron Information:

Intron Rank:
144661
Intron Class:
major
Intron Phase:
Intron Coordinates:
809949 - 822916
Intron Length:
12968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
GTCCTATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTATCTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
73.1
0.52
0.8
70.3
35.3
Minor 5ss
36.7
-1.5
3.2
48.7
41.4
Minor BPS
59.3
0.37
1.8
81.46
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027954
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024165
809814 - 824076
14263