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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8108555_8110398_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8108555 - 8110398
Intron Length:
1844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
ACTCCTTAAGTA
Flanking Amino Acid:
LVEYKKSDAYLIKLKYMKLK
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
77.4
33.6
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
46.7
-0.3
2.8
68.1
42.7
Minor BPS
46
-0.3
1.8
54.51
39

Associated Gene:

Gene:
KIZ
Ensembl Gene ID:
ENSAPLG00000013782
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034654
8067605 - 8115336
47732
ENSAPLT00000028496
8074785 - 8115336
40552
ENSAPLT00000014367
8067559 - 8115336
47778