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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8110462_8114995_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8110462 - 8114995
Intron Length:
4534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAATTATGAAAT
Flanking Amino Acid:
TGGLLRRLRDSETRRLELER
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.7
0.69
0.8
73.5
37.1
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
47.7
-0.1
1.7
64.34
38.8

Associated Gene:

Gene:
KIZ
Ensembl Gene ID:
ENSAPLG00000013782
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034654
8067605 - 8115336
47732
ENSAPLT00000028496
8074785 - 8115336
40552
ENSAPLT00000014367
8067559 - 8115336
47778