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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81119868_81140591_R

Intron Information:

Intron Rank:
132376
Intron Class:
major
Intron Phase:
Intron Coordinates:
81119868 - 81140591
Intron Length:
20724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCGTTTG
5'SS Class:
major
3'SS Sequence:
TGTTTCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATATCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
69.9
43.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
76.2
0.59
0.9
69.3
41.7
Minor 5ss
38.2
-1.3
3
49.8
46.5
Minor BPS
72.8
0.71
1.6
78.83
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018476
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028361
81119283 - 81140755
21473