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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81119868_81165091_R

Intron Information:

Intron Rank:
132377
Intron Class:
major
Intron Phase:
Intron Coordinates:
81119868 - 81165091
Intron Length:
45224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATATCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
76.2
0.59
0.9
69.3
41.7
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
72.8
0.71
1.6
78.83
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018476
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036987
81119283 - 81165319
46037