Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81143993_81165091_R

Intron Information:

Intron Rank:

132379

Intron Class:

major

Intron Phase:

Intron Coordinates:

81143993 - 81165091

Intron Length:

21099

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCACC

5'SS Class:

strong_major

3'SS Sequence:

ATTATGTTAGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATTAT

U12 Branch Point Sequence:

TTTGGTTTGACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.9

78.8

35.5

Major BPS

68.1

0.45

58.1

38.5

Major PPT

0.5

43.1

Minor 5ss

40.6

-1

2.8

52.8

44.1

Minor BPS

61.1

0.43

1.9

82.48

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018476

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043549

81119609 - 81165319

45711