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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81334845_81335344_R

Intron Information:

Intron Rank:
139369
Intron Class:
major
Intron Phase:
Intron Coordinates:
81334845 - 81335344
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCACTGTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AGTTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.4
0.66
0.9
76.3
37.4
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
61.7
0.45
1.7
78.3
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022453
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023279
81334752 - 81367126
32375