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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81335491_81336797_R

Intron Information:

Intron Rank:
139376
Intron Class:
major
Intron Phase:
Intron Coordinates:
81335491 - 81336797
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCATGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTGTTATAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.9
0.74
0.9
80.4
36.9
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
50.4
0.01
1.9
64.69
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022453
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036363
81334989 - 81336961
1973