About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81360823_81361629_F

Intron Information:

Intron Rank:
150399
Intron Class:
major
Intron Phase:
Intron Coordinates:
81360823 - 81361629
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATATATT
5'SS Class:
major
3'SS Sequence:
TTTATATATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CATTTTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
78.6
34.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
79.7
0.67
0.9
74.6
39.2
Minor 5ss
47.3
-0.3
2.7
65.1
41.4
Minor BPS
58.6
0.27
1.7
68.47
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029311
81360661 - 81363118
2458