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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81361722_81362391_F

Intron Information:

Intron Rank:
150400
Intron Class:
major
Intron Phase:
Intron Coordinates:
81361722 - 81362391
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCTGTTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
77.3
37.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.8
0.65
0.9
73.1
37.3
Minor 5ss
42.1
-0.9
2.9
59.1
45
Minor BPS
48
-0.3
2.1
58.34
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029311
81360661 - 81363118
2458