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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81398649_81428990_R

Intron Information:

Intron Rank:
150746
Intron Class:
major
Intron Phase:
Intron Coordinates:
81398649 - 81428990
Intron Length:
30342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89.4
0.89
0.6
87.7
22.4
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
60.3
0.4
1.7
78.79
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028607
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029292
81397873 - 81431957
34085