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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81429079_81430017_R

Intron Information:

Intron Rank:
150749
Intron Class:
major
Intron Phase:
Intron Coordinates:
81429079 - 81430017
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
GTCTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATGATTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.4
32.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.7
0.76
0.8
81.4
35
Minor 5ss
34.6
-1.8
3.3
45.9
43.7
Minor BPS
56.2
0.06
1.7
61.11
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028607
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030920
81428130 - 81444289
16160