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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81429079_81431194_R

Intron Information:

Intron Rank:
150744
Intron Class:
major
Intron Phase:
Intron Coordinates:
81429079 - 81431194
Intron Length:
2116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATGATTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.7
0.76
0.8
81.4
35
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
56.2
0.06
1.7
61.11
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028607
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029292
81397873 - 81431957
34085
ENSAPLT00000025882
81426847 - 81431957
5111