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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81486253_81487772_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81486253 - 81487772
Intron Length:
1520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATTACTGAATC
Flanking Amino Acid:
RVQIGHFLCMVGLVYSAEYI
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87.5
0.84
0.8
83.7
31.3
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
59.6
0.28
1.6
68.49
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034300
81485873 - 81489024
3152