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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81486253_81488605_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81486253 - 81488605
Intron Length:
2353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCCTTCTTAAAT
Flanking Amino Acid:
PGANWALSLHGLFSKYQYFD
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
71.7
0.76
1.4
80.39
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036145
81485665 - 81489024
3360