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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81487828_81488605_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81487828 - 81488605
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCCTTCTTAAAT
Flanking Amino Acid:
YINELAAMNWRLFSKYQYFD
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
71.7
0.76
1.4
80.39
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034300
81485873 - 81489024
3152