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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81678129_81678232_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81678129 - 81678232
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TGACTCTTATTT
Flanking Amino Acid:
MKDKFLKHLTGPLYFSPKCS
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
38.1
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
80.4
0.68
0.9
77.1
35.8
Minor 5ss
39.1
-1.2
3.3
58.7
45.8
Minor BPS
56.5
0.28
1.6
70.8
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030960
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022612
81674355 - 81681080
6726