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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81678314_81681014_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81678314 - 81681014
Intron Length:
2701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCCTAACA
Flanking Amino Acid:
HNTRDCTIPAYYKRCARLLT
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
77
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.3
0.79
0.8
81.8
28.7
Minor 5ss
36.4
-1.5
3.2
49.6
39.8
Minor BPS
75.9
0.81
1.6
87.87
29.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030960
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022612
81674355 - 81681080
6726