About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81694666_81697149_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81694666 - 81697149
Intron Length:
2484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATAACATTTACT
Flanking Amino Acid:
YILCMDESNLRDLKRKSNQV
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
52.5
0.16
2
73.74
42

Associated Gene:

Gene:
ACP1
Ensembl Gene ID:
ENSAPLG00000022178
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047704
81693614 - 81704498
10885
ENSAPLT00000039144
81693614 - 81704498
10885