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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81697212_81700970_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81697212 - 81700970
Intron Length:
3759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGAG
5'SS Class:
major
3'SS Sequence:
TTTTTAATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATGTTTTTAATT
Flanking Amino Acid:
GIETAHKARQITKDDFQSFD
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.3
40
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.7
0.74
0.8
75.5
38.4
Minor 5ss
27.7
-2.6
3.6
37
47.6
Minor BPS
73.6
0.82
1.1
81.25
35

Associated Gene:

Gene:
ACP1
Ensembl Gene ID:
ENSAPLG00000022178
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047704
81693614 - 81704498
10885