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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81701085_81701364_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81701085 - 81701364
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCTTTAAATG
Flanking Amino Acid:
LVTDEKVENKWMTDSAAVSD
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89.6
0.89
0.7
84.2
30.9
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
55.1
0.02
1.7
63.63
39.2

Associated Gene:

Gene:
ACP1
Ensembl Gene ID:
ENSAPLG00000022178
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047704
81693614 - 81704498
10885