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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81708860_81718889_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
81708860 - 81718889
Intron Length:
10030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TCATGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCTTCTTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
75
35.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.8
0.72
0.9
75.7
38
Minor 5ss
36.1
-1.6
2.8
42.3
38.4
Minor BPS
61.9
0.46
1.7
75.88
41.7

Associated Gene:

Gene:
SH3YL1
Ensembl Gene ID:
ENSAPLG00000012302
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012817
81708859 - 81752013
43155