About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81717031_81718889_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81717031 - 81718889
Intron Length:
1859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
TCATGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCTTCTTTCATT
Flanking Amino Acid:
RIVKKHRVNNPIPSNLK
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.8
0.72
0.9
75.7
38
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
61.9
0.46
1.7
75.88
41.7

Associated Gene:

Gene:
SH3YL1
Ensembl Gene ID:
ENSAPLG00000012302
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022495
81716805 - 81752013
35209