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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81728608_81729558_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81728608 - 81729558
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
V*LKGKKPIASFMGRIYVLV
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79
0.65
1
80
36.4
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
SH3YL1
Ensembl Gene ID:
ENSAPLG00000012302
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022495
81716805 - 81752013
35209
ENSAPLT00000012817
81708859 - 81752013
43155