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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81731296_81751767_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81731296 - 81751767
Intron Length:
20472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATT
Flanking Amino Acid:
LNFQLIMPLRVALQAIP*K*
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
84.7
0.78
0.7
82.3
28
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
90.6
1.35
0.7
99.65
21.1

Associated Gene:

Gene:
SH3YL1
Ensembl Gene ID:
ENSAPLG00000012302
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022495
81716805 - 81752013
35209
ENSAPLT00000012817
81708859 - 81752013
43155