Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8191334_8192925_R

Intron Information:

Intron Rank:

155329

Intron Class:

major

Intron Phase:

Intron Coordinates:

8191334 - 8192925

Intron Length:

1592

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

GTTTATGTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

TATTATTTCAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

75.9

0.64

66.1

40.5

Major PPT

74.6

0.55

66.1

Minor 5ss

37.6

-1.4

2.8

48.3

42.5

Minor BPS

47.5

-0.2

2.2

64.05

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031053

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035859

8168252 - 8193537

25286