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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81972542_82001300_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81972542 - 82001300
Intron Length:
28759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
ACTTCTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAACT
Flanking Amino Acid:
RWSIKSAGKLVVPSRKMKSL
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.1
84.7
32.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.1
0.61
0.8
74.7
34.1
Minor 5ss
38.2
-1.3
2.8
50.3
39.9
Minor BPS
75.4
0.88
1.4
88.41
36.6

Associated Gene:

Gene:
TDRP
Ensembl Gene ID:
ENSAPLG00000012684
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042400
81972500 - 82011698
39199