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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81978834_81980834_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81978834 - 81980834
Intron Length:
2001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACC
5'SS Class:
major
3'SS Sequence:
ATTTTATGTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGTTCTTTAACC
Flanking Amino Acid:
LCQYHFAEKQFCRHLILSEK
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.7
38.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.4
0.64
1
70.6
44.1
Minor 5ss
40.7
-1
2.8
53.4
43.4
Minor BPS
81.2
0.96
1
81.67
31.8

Associated Gene:

Gene:
FBXO25
Ensembl Gene ID:
ENSAPLG00000012444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039058
81964166 - 81989225
25060
ENSAPLT00000012973
81964166 - 81989225
25060