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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_81984978_81988606_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81984978 - 81988606
Intron Length:
3629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTT
5'SS Class:
major
3'SS Sequence:
TCTCACTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
TTCTCTCTCACT
Flanking Amino Acid:
KDYHLALLLKDGGHPCTASD
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.3
38.9
Major BPS
62.2
0.3
1
59
38
Major PPT
78.1
0.63
0.8
71.8
32.4
Minor 5ss
46.3
-0.4
2.8
67.8
43.1
Minor BPS
56
0.27
2.1
80.09
42.2

Associated Gene:

Gene:
FBXO25
Ensembl Gene ID:
ENSAPLG00000012444
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012973
81964166 - 81989225
25060