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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82001587_82003917_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82001587 - 82003917
Intron Length:
2331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TCATTGTTATTT
Flanking Amino Acid:
LAGCKSPKSKGTNLKLKEEM
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.3
30.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.3
0.7
0.8
73.8
41.4
Minor 5ss
33.6
-1.9
2.8
31.7
42.6
Minor BPS
47.7
-0
2.2
67.57
44

Associated Gene:

Gene:
TDRP
Ensembl Gene ID:
ENSAPLG00000012684
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042400
81972500 - 82011698
39199
ENSAPLT00000025828
82001241 - 82021347
20107
ENSAPLT00000025493
81995344 - 82011698
16355
ENSAPLT00000013196
82001241 - 82021347
20107