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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82004022_82010536_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82004022 - 82010536
Intron Length:
6515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTTCTCTGCATA
Flanking Amino Acid:
PSSVSQLATKVQGASFRGWK
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
72
0.5
0.9
68.2
32.1
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
47.2
-0.2
1.9
60.85
39.7

Associated Gene:

Gene:
TDRP
Ensembl Gene ID:
ENSAPLG00000012684
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042400
81972500 - 82011698
39199
ENSAPLT00000025828
82001241 - 82021347
20107
ENSAPLT00000025493
81995344 - 82011698
16355