About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82010597_82021227_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82010597 - 82021227
Intron Length:
10631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
PPAAAFAAPQNKDQFLHDEV
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
67.4
38.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
74.1
0.54
1.7
88
29.4
Minor 5ss
28.1
-2.5
3.7
39.6
46.7
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
TDRP
Ensembl Gene ID:
ENSAPLG00000012684
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025828
82001241 - 82021347
20107