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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82072305_82072452_R

Intron Information:

Intron Rank:
153128
Intron Class:
major
Intron Phase:
Intron Coordinates:
82072305 - 82072452
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTAAAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTCTAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.3
0.48
1
63.3
41.5
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
54.7
0.22
1.9
77.32
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029954
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026093
82069214 - 82073462
4249