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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82201921_82246798_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82201921 - 82246798
Intron Length:
44878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTT
5'SS Class:
major
3'SS Sequence:
TTTGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTATGTTAATG
Flanking Amino Acid:
MGTTQVLPGILQKHC
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
66.4
44.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
35.7
-1.6
3.7
56.5
47.7
Minor BPS
49.7
-0.1
2.1
60.2
42.1

Associated Gene:

Gene:
DLGAP2
Ensembl Gene ID:
ENSAPLG00000012783
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047239
82201811 - 82632215
430405
ENSAPLT00000013325
82201906 - 82632215
430310
ENSAPLT00000047249
82201811 - 82632215
430405