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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8221468_8236764_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8221468 - 8236764
Intron Length:
15297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GAAAATTTGACT
Flanking Amino Acid:
ELDSILLVFEKILQLLPERI
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.3
0.82
0.8
81.7
30.4
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
49.8
0.07
1.5
63.5
40.2

Associated Gene:

Gene:
RALGAPA2
Ensembl Gene ID:
ENSAPLG00000013547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014143
8203326 - 8293213
89888
ENSAPLT00000040971
8203326 - 8293213
89888
ENSAPLT00000038761
8203326 - 8293213
89888
ENSAPLT00000031801
8203326 - 8293213
89888
ENSAPLT00000047851
8203326 - 8293213
89888
ENSAPLT00000026457
8203326 - 8293213
89888
ENSAPLT00000047025
8203326 - 8293213
89888