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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_822976_823086_F

Intron Information:

Intron Rank:
144662
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
822976 - 823086
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCT
5'SS Class:
major
3'SS Sequence:
CCATGCTGCGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTAAAA
U12 Branch Point Sequence:
AAAGCAAAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.3
35
Major BPS
60.8
0.27
1.1
68.9
33
Major PPT
58.8
0.2
1
53.5
36.4
Minor 5ss
45.3
-0.5
2.4
60.2
44.2
Minor BPS
40.7
-0.7
2.1
49.33
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027954
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024165
809814 - 824076
14263