About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82389664_82470849_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82389664 - 82470849
Intron Length:
81186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTGTTTTAATT
Flanking Amino Acid:
SQCTLCGEPEDLDSLTGHAF
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
83.2
30.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.2
0.72
0.9
78.9
38.5
Minor 5ss
37.5
-1.4
3
48.1
47.6
Minor BPS
69.8
0.7
1.3
81.14
35.2

Associated Gene:

Gene:
DLGAP2
Ensembl Gene ID:
ENSAPLG00000012783
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047239
82201811 - 82632215
430405
ENSAPLT00000041783
82165934 - 82632215
466282
ENSAPLT00000034879
82287523 - 82632215
344693
ENSAPLT00000028635
82165934 - 82632215
466282
ENSAPLT00000047249
82201811 - 82632215
430405