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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8241009_8241529_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8241009 - 8241529
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTCCTTTTATT
Flanking Amino Acid:
NLISPPNSPDAKIFPEEITP
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.7
0.83
0.7
84.8
28.4
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
61.8
0.45
1.6
76.99
39.9

Associated Gene:

Gene:
RALGAPA2
Ensembl Gene ID:
ENSAPLG00000013547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031801
8203326 - 8293213
89888
ENSAPLT00000047851
8203326 - 8293213
89888
ENSAPLT00000026457
8203326 - 8293213
89888
ENSAPLT00000047025
8203326 - 8293213
89888
ENSAPLT00000017294
8203326 - 8293213
89888
ENSAPLT00000040971
8203326 - 8293213
89888
ENSAPLT00000014143
8203326 - 8293213
89888
ENSAPLT00000038761
8203326 - 8293213
89888