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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8241646_8245890_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8241646 - 8245890
Intron Length:
4245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGAGG
5'SS Class:
major
3'SS Sequence:
TTCTTCTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
AGTAAGTTAATT
Flanking Amino Acid:
QLLLKYMVIQTVGVVNQDKN
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.6
45.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
79.9
0.67
0.8
77
31.7
Minor 5ss
25.1
-2.9
3.1
30.7
42.8
Minor BPS
48.2
-0
2.2
69.14
41.5

Associated Gene:

Gene:
RALGAPA2
Ensembl Gene ID:
ENSAPLG00000013547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047025
8203326 - 8293213
89888