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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8242636_8244013_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8242636 - 8244013
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTTTACAT
Flanking Amino Acid:
KLTNLYKPVLDIPDIRPRPV
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.7
0.53
0.9
67.9
38.7
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
70.5
0.72
1.7
88.96
35.8

Associated Gene:

Gene:
RALGAPA2
Ensembl Gene ID:
ENSAPLG00000013547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031801
8203326 - 8293213
89888
ENSAPLT00000026457
8203326 - 8293213
89888
ENSAPLT00000047851
8203326 - 8293213
89888
ENSAPLT00000017294
8203326 - 8293213
89888
ENSAPLT00000040971
8203326 - 8293213
89888
ENSAPLT00000014143
8203326 - 8293213
89888
ENSAPLT00000038761
8203326 - 8293213
89888