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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8246122_8248413_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8246122 - 8248413
Intron Length:
2292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTAAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTAACTTTAAAT
Flanking Amino Acid:
VNFVNEVFRQAFLLPSSDIS
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.6
0.49
1
68.2
41
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
70.7
0.73
1.4
83.2
37.2

Associated Gene:

Gene:
RALGAPA2
Ensembl Gene ID:
ENSAPLG00000013547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014143
8203326 - 8293213
89888
ENSAPLT00000040971
8203326 - 8293213
89888
ENSAPLT00000038761
8203326 - 8293213
89888
ENSAPLT00000026457
8203326 - 8293213
89888
ENSAPLT00000047851
8203326 - 8293213
89888
ENSAPLT00000017294
8203326 - 8293213
89888
ENSAPLT00000047025
8203326 - 8293213
89888