Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8246122_8249465_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8246122 - 8249465

Intron Length:

3344

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGTG

5'SS Class:

strong_major

3'SS Sequence:

ATGTTTTTGAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTGAA

U12 Branch Point Sequence:

TGGTCACTAACT

Flanking Amino Acid:

VNFVNEVFRQLSSDHSGHKR

Intron Amino Acid Position:

411

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.85

0.9

76.4

39.6

Major BPS

65.6

0.39

0.9

55.4

32.7

Major PPT

64.4

0.33

1.2

67.3

42.4

Minor 5ss

35.2

-1.7

3.5

48.8

47.4

Minor BPS

58.4

0.34

79.2

42.2

Associated Gene:

Gene:

RALGAPA2

Ensembl Gene ID:

ENSAPLG00000013547

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031801

8203326 - 8293213

89888