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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82470883_82528103_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82470883 - 82528103
Intron Length:
57221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTGG
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GAATTATTAAAT
Flanking Amino Acid:
LDSLTGHAFPEEEGGDLLKS
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.2
61.3
45.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86.8
0.83
0.7
84.4
30.5
Minor 5ss
41.7
-0.9
3.2
55.9
48.3
Minor BPS
54.8
0.23
1.7
69.65
40.1

Associated Gene:

Gene:
DLGAP2
Ensembl Gene ID:
ENSAPLG00000012783
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047239
82201811 - 82632215
430405
ENSAPLT00000034879
82287523 - 82632215
344693
ENSAPLT00000028635
82165934 - 82632215
466282
ENSAPLT00000047249
82201811 - 82632215
430405