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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_82528170_82542702_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82528170 - 82542702
Intron Length:
14533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAGATC
5'SS Class:
major
3'SS Sequence:
GTTCTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCCTGACAG
Flanking Amino Acid:
SFPGTPEEELDQQYSWSPSQ
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
70.4
40
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.6
0.53
1
68.9
37.2
Minor 5ss
35.1
-1.7
3.5
51.2
45.6
Minor BPS
50.3
-0.1
1.9
61.48
45.9

Associated Gene:

Gene:
DLGAP2
Ensembl Gene ID:
ENSAPLG00000012783
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047239
82201811 - 82632215
430405
ENSAPLT00000043530
82165934 - 82632215
466282
ENSAPLT00000034879
82287523 - 82632215
344693
ENSAPLT00000028635
82165934 - 82632215
466282
ENSAPLT00000047249
82201811 - 82632215
430405