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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8252818_8254035_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8252818 - 8254035
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGACC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTGGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTCTGACAT
Flanking Amino Acid:
ARNIVRQRATAKRSQSISNC
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
65.5
38.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
72.2
0.5
1.1
76.1
32.9
Minor 5ss
39
-1.2
3.1
52.3
44.6
Minor BPS
58.3
0.34
1.8
81.8
39.4

Associated Gene:

Gene:
RALGAPA2
Ensembl Gene ID:
ENSAPLG00000013547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026457
8203326 - 8293213
89888
ENSAPLT00000047851
8203326 - 8293213
89888
ENSAPLT00000040971
8203326 - 8293213
89888
ENSAPLT00000038761
8203326 - 8293213
89888